STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g52320DBnaA03g52320D protein. (479 aa)    
Predicted Functional Partners:
BnaA09g40940D
BnaA09g40940D protein.
    
 0.965
BnaA03g00460D
BnaA03g00460D protein.
  
 
 0.962
BnaC09g46470D
BnaC09g46470D protein.
  
 
 0.962
BnaA10g27560D
BnaA10g27560D protein.
  
 
 0.962
BnaA09g55090D
BnaA09g55090D protein.
   
 
 0.957
BnaA05g32480D
BnaA05g32480D protein.
    
 0.945
BnaA09g29000D
UDP-glucose 6-dehydrogenase.
  
 
 0.929
BnaC09g42430D
UDP-glucose 6-dehydrogenase.
  
 
 0.929
BnaC06g12620D
UDP-glucose 6-dehydrogenase.
  
 
 0.929
BnaA01g29180D
BnaA01g29180D protein.
  
 
 0.927
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.