STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g00640DBnaC05g00640D protein. (1777 aa)    
Predicted Functional Partners:
BnaC04g50000D
BnaC04g50000D protein.
  
   
 0.639
BnaA04g25920D
BnaA04g25920D protein.
  
   
 0.638
BnaA05g27880D
BnaA05g27880D protein.
    
 
 0.561
BnaC03g78090D
BnaC03g78090D protein.
    
 
 0.540
BnaC04g55090D
BnaC04g55090D protein.
  
   
 0.523
BnaC08g44830D
BnaC08g44830D protein.
   
  
 0.517
BnaC07g07200D
BnaC07g07200D protein.
   
 
 0.517
BnaA02g20120D
BnaA02g20120D protein.
   
  
 0.515
BnaA02g20240D
BnaA02g20240D protein.
   
  
 0.515
BnaA09g38440D
BnaA09g38440D protein.
  
   
 0.511
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.