Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g00640DBnaC05g00640D protein. (1777 aa)    
Predicted Functional Partners:
BnaA05g27880D
BnaA05g27880D protein.
    
 
 0.878
BnaC03g78090D
BnaC03g78090D protein.
      
 0.756
BnaC07g07200D
BnaC07g07200D protein.
    
 
 0.748
BnaC04g50000D
BnaC04g50000D protein.
  
   
 0.711
BnaA04g25920D
BnaA04g25920D protein.
  
   
 0.711
BnaA09g52020D
BnaA09g52020D protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.
      
 0.693
BnaC08g44830D
BnaC08g44830D protein.
   
  
 0.690
BnaA05g33900D
BnaA05g33900D protein.
      
 0.679
BnaC05g48780D
BnaC05g48780D protein.
      
 0.679
BnaA02g30600D
BnaA02g30600D protein.
  
   0.663
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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