STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g38300DBnaC09g38300D protein. (479 aa)    
Predicted Functional Partners:
BnaC04g50990D
BnaC04g50990D protein.
   
  
 0.496
BnaA04g29620D
BnaA04g29620D protein.
   
  
 0.496
BnaCnng74560D
BnaCnng74560D protein.
   
  
 0.496
BnaA09g05790D
Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.
      
 0.465
BnaA09g47910D
BnaA09g47910D protein.
      
 0.465
BnaC08g42220D
BnaC08g42220D protein.
      
 0.465
BnaCnng33290D
Inositol polyphosphate multikinase; Inositol phosphate kinase with a broad substrate specificity.
      
 0.465
BnaC05g40290D
BnaC05g40290D protein.
    
 0.460
BnaA05g26160D
BnaA05g26160D protein.
    
 0.460
BnaA07g00530D
BnaA07g00530D protein.
  
 
 0.447
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.