STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g07340DBnaA10g07340D protein. (403 aa)    
Predicted Functional Partners:
BnaCnng05860D
BnaCnng05860D protein.
    
 0.987
BnaA05g33420D
BnaA05g33420D protein.
    
 0.987
BnaA07g07810D
BnaA07g07810D protein.
   
 0.982
BnaA04g11880D
BnaA04g11880D protein; Belongs to the PI3/PI4-kinase family.
   
 0.973
BnaA08g29690D
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
   
 0.973
BnaA06g20800D
BnaA06g20800D protein; Belongs to the PI3/PI4-kinase family.
   
 0.966
BnaAnng27490D
BnaAnng27490D protein.
   
 0.966
BnaCnng08930D
BnaCnng08930D protein.
   
 0.954
BnaA06g39510D
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.954
BnaA06g11440D
BnaA06g11440D protein.
   
 0.952
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.