STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g13450DBnaA08g13450D protein; Belongs to the glycosyl hydrolase 17 family. (513 aa)    
Predicted Functional Partners:
BnaA07g08010D
BnaA07g08010D protein.
      
 0.497
BnaA04g27900D
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.493
BnaA06g36400D
BnaA06g36400D protein.
      
 0.483
BnaCnng49150D
BnaCnng49150D protein.
  
     0.473
BnaA09g30170D
BnaA09g30170D protein.
      
 0.469
BnaCnng19380D
BnaCnng19380D protein.
  
     0.448
BnaCnng25430D
BnaCnng25430D protein.
  
     0.446
BnaC05g51990D
Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family.
  
     0.438
BnaC05g51660D
BnaC05g51660D protein.
  
     0.434
BnaC09g09740D
BnaC09g09740D protein.
  
     0.429
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.