Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g48040DBnaC04g48040D protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (366 aa)    
Predicted Functional Partners:
BnaA04g20910D
BnaA04g20910D protein; Belongs to the protein kinase superfamily.
  
 0.593
BnaC04g44890D
BnaC04g44890D protein.
  
 0.588
BnaA08g02570D
BnaA08g02570D protein.
  
 0.574
BnaA07g00650D
BnaA07g00650D protein.
    
 0.548
BnaA09g51810D
BnaA09g51810D protein; Belongs to the actin-binding proteins ADF family.
   
 0.532
BnaC05g12540D
BnaC05g12540D protein.
      
 0.519
BnaA06g11030D
BnaA06g11030D protein.
      
 0.519
BnaC09g11730D
BnaC09g11730D protein.
   
  
 0.511
BnaA09g11290D
BnaA09g11290D protein.
   
  
 0.511
BnaC04g44870D
BnaC04g44870D protein.
   
 0.494
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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