STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g44820DBnaC03g44820D protein. (672 aa)    
Predicted Functional Partners:
BnaC05g47760D
BnaC05g47760D protein; Belongs to the GRAS family.
    
 
 0.754
BnaCnng27900D
BnaCnng27900D protein.
  
 
 0.683
BnaA03g18970D
BnaA03g18970D protein.
  
 
 0.681
BnaC03g72510D
BnaC03g72510D protein.
  
 
 0.677
BnaC05g00680D
BnaC05g00680D protein.
      
 0.652
BnaAnng07530D
BnaAnng07530D protein.
    
 
 0.627
BnaC05g46680D
BnaC05g46680D protein.
      
 0.616
BnaA09g01090D
BnaA09g01090D protein; Belongs to the terpene synthase family.
      
 0.598
BnaAnng40060D
BnaAnng40060D protein.
   
  
 0.595
BnaC01g35900D
BnaC01g35900D protein.
      
 0.575
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.