STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g36680DBnaC09g36680D protein. (885 aa)    
Predicted Functional Partners:
BnaC08g41150D
BnaC08g41150D protein.
  
 0.785
BnaA08g24700D
BnaA08g24700D protein.
  
 0.785
BnaA09g47090D
BnaA09g47090D protein.
  
 0.785
BnaA09g10710D
BnaA09g10710D protein.
  
 0.785
BnaCnng33420D
BnaCnng33420D protein.
  
 0.785
BnaAnng29300D
BnaAnng29300D protein.
    
 0.634
BnaA01g05710D
BnaA01g05710D protein.
    
 0.586
BnaC01g00590D
BnaC01g00590D protein.
    
 0.586
BnaC06g15850D
BnaC06g15850D protein.
    
 0.528
BnaC04g25100D
BnaC04g25100D protein.
    
 0.528
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.