Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g42570DBnaC04g42570D protein. (621 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.524
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.509
BnaA01g24490D
BnaA01g24490D protein.
  
     0.506
BnaCnng64530D
BnaCnng64530D protein.
  
     0.503
BnaA06g39250D
BnaA06g39250D protein.
  
     0.500
BnaA05g27710D
BnaA05g27710D protein.
  
     0.499
BnaC02g01410D
BnaC02g01410D protein.
  
     0.497
BnaAnng06330D
BnaAnng06330D protein.
  
     0.497
BnaA03g47790D
BnaA03g47790D protein.
  
     0.494
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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