STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g48960DBnaC03g48960D protein. (1080 aa)    
Predicted Functional Partners:
BnaC06g15340D
BnaC06g15340D protein.
    
 
 0.912
BnaC06g15350D
BnaC06g15350D protein.
    
 
 0.912
BnaC09g21670D
BnaC09g21670D protein.
   
 0.893
BnaA03g18110D
BnaA03g18110D protein.
   
 
 0.817
BnaC03g21630D
BnaC03g21630D protein.
   
 
 0.817
BnaCnng37720D
BnaCnng37720D protein.
   
 
 0.817
BnaA08g27310D
BnaA08g27310D protein.
    
   0.771
BnaA09g51090D
BnaA09g51090D protein; Belongs to the protein kinase superfamily.
    
   0.771
BnaC08g45910D
BnaC08g45910D protein; Belongs to the protein kinase superfamily.
    
   0.771
BnaA09g07480D
BnaA09g07480D protein.
   
 
 0.750
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.