STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g29050DBnaA08g29050D protein. (466 aa)    
Predicted Functional Partners:
BnaC05g12790D
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.961
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.961
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.928
BnaC06g13330D
BnaC06g13330D protein.
  
 
 0.924
BnaA04g10710D
BnaA04g10710D protein.
  
 
 0.924
BnaC04g56150D
BnaC04g56150D protein.
  
 
 0.924
BnaC06g15120D
BnaC06g15120D protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.899
BnaA09g06940D
BnaA09g06940D protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.899
BnaAnng37960D
BnaAnng37960D protein.
   
 
 0.899
BnaC09g39060D
BnaC09g39060D protein.
   
   0.872
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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