STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g22450DBnaA02g22450D protein. (640 aa)    
Predicted Functional Partners:
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.777
BnaA04g05330D
BnaA04g05330D protein.
    
 0.729
BnaCnng10240D
BnaCnng10240D protein.
   
 0.665
CENH3
Centromere-specific H3 variant protein.
   
 0.663
BnaA06g02340D
BnaA06g02340D protein.
    
 0.657
BnaC06g04580D
BnaC06g04580D protein.
    
 0.657
BnaC01g32310D
BnaC01g32310D protein.
    
 0.656
BnaA01g25390D
BnaA01g25390D protein.
    
 0.656
BnaC05g29310D
BnaC05g29310D protein.
    
 0.595
BnaC09g40240D
BnaC09g40240D protein.
    
 0.595
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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