STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g27360DBnaA08g27360D protein. (907 aa)    
Predicted Functional Partners:
BnaC09g40670D
Autophagy protein 5; Required for autophagy.
     
 0.900
BnaC06g07010D
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.874
BnaCnng28480D
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.874
BnaA09g03750D
BnaA09g03750D protein.
   
 0.858
BnaC02g39760D
Mitochondrial Rho GTPase.
   
 0.858
BnaC03g34230D
Mitochondrial Rho GTPase.
   
 0.858
BnaAnng23350D
Mitochondrial Rho GTPase.
   
 0.858
BnaA09g52280D
BnaA09g52280D protein.
   
 0.858
BnaC08g11760D
BnaC08g11760D protein.
     
 0.850
BnaA03g46880D
BnaA03g46880D protein.
     
 0.850
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.