STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g10330DBnaA05g10330D protein. (489 aa)    
Predicted Functional Partners:
BnaA03g00440D
BnaA03g00440D protein.
      
 0.493
BnaA03g00130D
BnaA03g00130D protein.
      
 0.467
BnaA05g10040D
BnaA05g10040D protein.
      
 0.467
BnaA05g15140D
BnaA05g15140D protein.
      
 0.467
BnaC04g54120D
BnaC04g54120D protein.
      
 0.467
BnaA09g05000D
BnaA09g05000D protein.
      
 0.439
BnaC03g64030D
BnaC03g64030D protein.
      
 0.404
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.