STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g09590DBnaA10g09590D protein. (100 aa)    
Predicted Functional Partners:
BnaA02g35300D
BnaA02g35300D protein.
      
 0.526
BnaA02g35280D
BnaA02g35280D protein.
      
 0.526
BnaAnng31360D
BnaAnng31360D protein.
      
 0.511
BnaA09g30290D
Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.
      
 0.459
BnaA03g55150D
Cysteine proteinase inhibitor; Belongs to the cystatin family. Phytocystatin subfamily.
      
 0.455
BnaA04g21650D
BnaA04g21650D protein; Belongs to the plant LTP family.
      
 0.431
BnaA09g13990D
BnaA09g13990D protein.
      
 0.404
BnaA09g14000D
BnaA09g14000D protein.
      
 0.404
BnaA08g29110D
BnaA08g29110D protein.
      
 0.404
BnaA08g29120D
BnaA08g29120D protein.
      
 0.404
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.