STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g08900DBnaA07g08900D protein. (139 aa)    
Predicted Functional Partners:
BnaC03g27900D
BnaC03g27900D protein.
  
 
   0.551
BnaC09g42220D
BnaC09g42220D protein.
  
 
   0.550
BnaC05g48410D
BnaC05g48410D protein.
  
 
   0.550
BnaAnng16810D
BnaAnng16810D protein.
  
 
   0.550
BnaA01g33130D
BnaA01g33130D protein.
  
 
   0.549
BnaA05g37110D
BnaA05g37110D protein.
  
 
   0.548
BnaC05g43660D
BnaC05g43660D protein.
  
 
   0.545
BnaA09g39780D
BnaA09g39780D protein.
    
 
 0.534
BnaC04g32880D
BnaC04g32880D protein.
  
     0.527
BnaC04g26090D
BnaC04g26090D protein.
    
 
 0.512
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.