STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g00170DBnaC05g00170D protein. (239 aa)    
Predicted Functional Partners:
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.984
BnaA04g05330D
BnaA04g05330D protein.
   
 0.982
BnaC03g73190D
BnaC03g73190D protein.
  
 
 0.980
BnaC09g39060D
BnaC09g39060D protein.
  
 
 0.970
BnaA09g35340D
BnaA09g35340D protein.
   
 0.966
BnaA02g16870D
BnaA02g16870D protein.
   
 0.966
BnaC06g14370D
BnaC06g14370D protein.
   
 0.965
BnaC03g34830D
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.965
BnaC04g08700D
BnaC04g08700D protein.
   
 0.965
BnaA01g32660D
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.965
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.