STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g08880DBnaA07g08880D protein. (1021 aa)    
Predicted Functional Partners:
BnaC04g31390D
BnaC04g31390D protein.
   
 0.867
BnaA07g38280D
BnaA07g38280D protein.
   
 0.854
BnaC01g31940D
BnaC01g31940D protein.
   
 0.808
BnaA09g02590D
BnaA09g02590D protein.
   
 0.808
BnaA01g25020D
BnaA01g25020D protein.
   
 0.808
BnaC05g36960D
BnaC05g36960D protein.
   
 0.802
BnaA02g04420D
BnaA02g04420D protein.
   
 0.756
BnaCnng75260D
BnaCnng75260D protein.
   
 0.756
BnaC05g47370D
Response regulator protein.
  
   
 0.735
BnaA09g04220D
BnaA09g04220D protein.
  
   
 0.704
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.