Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g12220DBnaA04g12220D protein. (855 aa)    
Predicted Functional Partners:
BnaA03g52870D
Adenylyl cyclase-associated protein; Belongs to the CAP family.
    
 0.690
BnaC03g66050D
Adenylyl cyclase-associated protein; Belongs to the CAP family.
    
 0.690
BnaC04g04310D
BnaC04g04310D protein; Belongs to the cytochrome P450 family.
      
 0.675
BnaA07g08550D
BnaA07g08550D protein.
   
  
 0.644
BnaC03g58480D
BnaC03g58480D protein.
   
  
 0.644
BnaC05g21740D
BnaA09g27400D protein.
   
  
 0.644
BnaA05g09880D
BnaA05g09880D protein.
   
  
 0.635
BnaCnng05280D
BnaCnng05280D protein.
   
  
 0.635
BnaC04g44150D
BnaC04g44150D protein.
   
  
 0.635
BnaA08g13810D
BnaA08g13810D protein.
      
 0.596
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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