Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BnaC08g41340DBnaC08g41340D protein; Belongs to the disease resistance NB-LRR family. (693 aa)    
Predicted Functional Partners:
BnaA04g05280D
BnaA04g05280D protein.
   
   0.546
BnaC04g55940D
BnaC04g55940D protein; Belongs to the complex I 75 kDa subunit family.
    
   0.541
BnaA02g34960D
BnaA02g34960D protein; Belongs to the complex I 20 kDa subunit family.
    
   0.527
BnaA03g54870D
BnaA03g54870D protein.
  
     0.518
BnaCnng40410D
BnaCnng40410D protein.
  
     0.516
BnaA10g27160D
BnaA10g27160D protein.
  
     0.509
BnaC04g36320D
BnaC04g36320D protein.
  
     0.498
BnaC06g12550D
BnaC06g12550D protein.
      
 0.498
BnaA08g06130D
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
      
 0.498
BnaA01g06910D
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
      
 0.498
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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