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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g28120DBnaA08g28120D protein. (756 aa)    
Predicted Functional Partners:
BnaA06g16190D
BnaA06g16190D protein; Belongs to the protein kinase superfamily.
  
 
  0.463
BnaC06g14720D
BnaC06g14720D protein; Belongs to the protein kinase superfamily.
  
 
  0.460
BnaA05g11580D
BnaA05g11580D protein.
  
 
  0.442
BnaC04g13360D
BnaC04g13360D protein; Belongs to the protein kinase superfamily.
  
 
  0.436
BnaC04g36900D
BnaC04g36900D protein.
  
 
  0.418
BnaC04g12990D
BnaC04g12990D protein.
  
 
  0.413
BnaA05g11450D
BnaA05g11450D protein; Belongs to the protein kinase superfamily.
  
 
  0.412
BnaCnng27530D
BnaCnng27530D protein.
  
 
  0.411
BnaA05g11230D
BnaA05g11230D protein.
  
 
  0.406
BnaC04g44890D
BnaC04g44890D protein.
  
 
  0.404
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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