STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g11600DBnaA02g11600D protein. (547 aa)    
Predicted Functional Partners:
BnaC09g12810D
BnaC09g12810D protein.
  
 
 0.696
BnaA09g12410D
BnaA09g12410D protein.
  
 
 0.696
BnaCnng07930D
BnaCnng07930D protein.
    
 0.583
BnaC07g33500D
BnaC07g33500D protein.
   
   0.506
BnaC06g01550D
Dihydrolipoyl dehydrogenase.
   
   0.506
BnaA01g17630D
Dihydrolipoyl dehydrogenase.
   
   0.506
BnaC01g21970D
Dihydrolipoyl dehydrogenase.
   
   0.506
BnaA04g05650D
BnaA04g05650D protein.
   
 0.503
BnaAnng41430D
BnaAnng41430D protein.
   
 0.503
BnaC08g09940D
BnaC08g09940D protein.
    
 0.498
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.