STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g11430DLipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (761 aa)    
Predicted Functional Partners:
BnaC07g32980D
BnaC07g32980D protein; Belongs to the cytochrome P450 family.
   
 
 0.972
BnaC02g29610D
BnaC02g29610D protein; Belongs to the cytochrome P450 family.
   
 
 0.966
BnaA05g33880D
BnaA05g33880D protein.
     
 0.764
BnaC06g23490D
BnaC06g23490D protein.
     
 0.761
BnaA02g16520D
BnaA02g16520D protein.
     
 0.761
BnaA07g38980D
BnaA07g38980D protein.
     
 0.761
BnaC09g52550D
BnaC09g52550D protein.
   
  
 0.739
BnaA08g24350D
BnaA08g24350D protein.
   
  
 0.692
BnaC08g15790D
BnaC08g15790D protein.
   
  
 0.692
BnaC04g05220D
BnaC04g05220D protein.
     
 0.687
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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