STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g29020DBnaA09g29020D protein. (319 aa)    
Predicted Functional Partners:
Bn1CON19
BnaC09g41990D protein.
    
 0.664
BnaA10g17240D
BnaA10g17240D protein; Belongs to the GRAS family.
    
 
 0.649
BnaA09g28720D
BnaA09g28720D protein.
   
 
 0.580
BnaC05g02520D
BnaC05g02520D protein.
    
 
 0.578
BnaC05g02490D
BnaC05g02490D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
      
 0.576
BnaA10g17220D
BnaA10g17220D protein.
      
 0.576
FT
BnaC02g45250D protein.
   
 
 0.573
FT-2
BnaA07g25310D protein.
   
 
 0.564
BnaC04g51200D
BnaC04g51200D protein.
  
 
  0.546
BnaC01g29880D
BnaC01g29880D protein.
  
 
  0.545
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.