STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g05760DBnaA09g05760D protein. (138 aa)    
Predicted Functional Partners:
BnaC04g03420D
BnaC04g03420D protein.
    
 0.779
BnaA07g03400D
BnaA07g03400D protein.
    
 0.771
BnaA04g29590D
Small nuclear ribonucleoprotein Sm D2.
   
 0.743
BnaC06g18620D
Small nuclear ribonucleoprotein Sm D2.
   
 0.743
BnaC07g03320D
BnaC07g03320D protein.
   
 0.742
BnaC01g24280D
Small nuclear ribonucleoprotein G.
   
  0.726
BnaC04g56220D
Small nuclear ribonucleoprotein G.
   
  0.726
BnaC03g63890D
Small nuclear ribonucleoprotein-associated protein.
   
 0.722
BnaCnng23040D
BnaCnng23040D protein.
   
 0.717
BnaCnng02700D
BnaCnng02700D protein.
    
 0.687
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.