STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g40460DBnaC09g40460D protein. (149 aa)    
Predicted Functional Partners:
BnaA04g16590D
BnaA04g16590D protein.
  
   
 0.660
BnaC05g00520D
BnaC05g00520D protein.
      
 0.493
BnaA06g39330D
BnaA06g39330D protein.
      
 0.471
BnaA05g09920D
BnaA05g09920D protein.
   
  
 0.435
BnaCnng05330D
BnaCnng05330D protein.
   
  
 0.435
BnaC03g35380D
BnaC03g35380D protein.
      
 0.433
BnaA05g30010D
BnaA05g30010D protein.
      
 0.433
BnaCnng28760D
BnaCnng28760D protein.
  
     0.402
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.