STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g21970DBnaA04g21970D protein. (413 aa)    
Predicted Functional Partners:
BnaC09g37600D
BnaC09g37600D protein.
      
 0.451
BnaC03g66120D
BnaC03g66120D protein.
  
     0.439
BnaA03g60690D
BnaA03g60690D protein.
  
     0.438
BnaA03g54380D
BnaA03g54380D protein.
  
     0.435
BnaA08g27390D
BnaA08g27390D protein; Belongs to the peptidase A1 family.
  
     0.434
BnaA08g24910D
BnaA08g24910D protein.
  
   
 0.430
BnaA09g28370D
BnaA09g28370D protein.
  
     0.430
BnaCnng34820D
BnaCnng34820D protein.
  
     0.428
BnaC08g15360D
BnaC08g15360D protein.
  
   
 0.426
BnaC04g00050D
BnaC04g00050D protein.
  
     0.424
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.