STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g04160DBnaA08g04160D protein. (290 aa)    
Predicted Functional Partners:
BnaC05g43690D
BnaC05g43690D protein.
    
   0.537
BnaA05g37130D
BnaA05g37130D protein.
    
   0.537
BnaAnng24320D
BnaAnng24320D protein.
    
   0.537
BnaC03g62820D
BnaC03g62820D protein.
  
     0.483
BnaUnng04290D
BnaUnng04290D protein.
  
     0.479
BnaAnng39680D
BnaAnng39680D protein.
  
     0.468
BnaA03g11240D
BnaA03g11240D protein.
  
     0.445
BnaC05g47050D
BnaC05g47050D protein.
      
 0.445
BnaAnng10620D
BnaAnng10620D protein.
      
 0.445
BnaC06g23630D
BnaC06g23630D protein.
  
     0.429
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.