Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g13910DBnaC05g13910D protein. (797 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaA01g24490D
BnaA01g24490D protein.
  
     0.500
BnaA04g17240D
BnaA04g17240D protein.
  
     0.467
BnaCnng02700D
BnaCnng02700D protein.
    
  0.454
BnaC02g03360D
BnaC02g03360D protein.
    
  0.454
BnaA09g00280D
BnaA09g00280D protein.
    
  0.454
BnaCnng14160D
BnaCnng14160D protein.
  
 
 0.450
BnaA05g31300D
BnaA05g31300D protein.
  
   
0.446
BnaA09g44370D
BnaA09g44370D protein.
     
 0.443
BnaAnng03040D
BnaAnng03040D protein.
  
   
0.441
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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