STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g03430DBnaC04g03430D protein. (419 aa)    
Predicted Functional Partners:
BnaA09g03130D
BnaA09g03130D protein.
   
   0.453
BnaAnng15250D
BnaAnng15250D protein.
  
     0.448
BnaAnng05130D
BnaAnng05130D protein.
  
     0.447
BnaA06g40810D
BnaA06g40810D protein.
  
     0.447
BnaA01g32900D
BnaA01g32900D protein.
  
     0.440
BnaA02g24380D
BnaA02g24380D protein.
  
     0.437
BnaA06g40960D
BnaA06g40960D protein.
  
     0.436
BnaA03g54800D
BnaA03g54800D protein.
  
 
   0.435
BnaCnng43650D
BnaCnng43650D protein.
  
     0.434
BnaC02g16720D
BnaC02g16720D protein.
  
     0.432
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.