STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g02540DBnaC05g02540D protein. (413 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
 0.873
BnaC09g12260D
BnaC09g12260D protein; Belongs to the WD repeat SEC13 family.
    
 0.728
BnaA09g12310D
BnaA09g12310D protein; Belongs to the WD repeat SEC13 family.
    
 0.728
BnaCnng22300D
BnaCnng22300D protein.
    
 0.728
BnaA05g12310D
BnaA05g12310D protein; Belongs to the WD repeat SEC13 family.
    
 0.719
BnaC03g16560D
BnaC03g16560D protein; Belongs to the WD repeat SEC13 family.
    
 0.719
BnaA05g33950D
BnaA05g33950D protein; Belongs to the WD repeat SEC13 family.
    
 0.719
BnaC05g48740D
BnaC05g48740D protein; Belongs to the WD repeat SEC13 family.
    
 0.719
BnaC09g14920D
BnaC09g14920D protein.
  
 0.707
BnaC04g53460D
BnaC04g53460D protein.
  
 0.707
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.