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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g02740DBnaC05g02740D protein. (1008 aa)    
Predicted Functional Partners:
BnaA07g04890D
BnaA07g04890D protein.
  
   
 0.488
BnaA07g00650D
BnaA07g00650D protein.
    
 0.466
BnaC04g27000D
BnaC04g27000D protein.
      
 0.465
BnaA04g05330D
BnaA04g05330D protein.
   
  0.461
BnaC05g25500D
BnaC05g25500D protein.
  
 
 
0.457
BnaA09g17230D
BnaA09g17230D protein.
  
 
  0.457
BnaA08g02860D
BnaA08g02860D protein.
  
 
 
0.456
BnaA09g17240D
BnaA09g17240D protein.
  
 
  0.455
BnaC04g13620D
BnaC04g13620D protein; Belongs to the protein kinase superfamily.
  
 
  0.453
BnaC04g02670D
BnaC04g02670D protein.
  
 
  0.451
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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