STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g02110DBnaA09g02110D protein. (188 aa)    
Predicted Functional Partners:
BnaC05g02160D
BnaC05g02160D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.
   
  
 0.685
BnaC09g11970D
BnaA09g11520D protein.
      
 0.643
BnaC05g44560D
BnaC05g44560D protein.
      
 0.643
BnaC03g65080D
BnaC03g65080D protein.
      
 0.643
BnaC05g44510D
BnaC05g44510D protein.
      
 0.641
BnaA09g13220D
BnaA09g13220D protein.
      
 0.583
BnaA09g51530D
3-ketoacyl-CoA synthase.
      
 0.570
BnaAnng17180D
BnaAnng17180D protein.
  
     0.537
BnaC09g41930D
BnaC09g41930D protein.
  
     0.535
BnaA04g17230D
BnaA04g17230D protein.
  
     0.524
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.