STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g26580DBnaA01g26580D protein. (95 aa)    
Predicted Functional Partners:
BnaCnng63350D
BnaCnng63350D protein.
      
 0.509
BnaA02g27580D
BnaA02g27580D protein.
      
 0.501
BnaC06g18680D
BnaC06g18680D protein.
      
 0.495
BnaC07g48610D
BnaC07g48610D protein.
      
 0.493
BnaC07g48620D
BnaC07g48620D protein.
      
 0.482
BnaA09g52570D
BnaA09g52570D protein.
      
 0.482
BnaA03g19100D
BnaA03g19100D protein.
      
 0.469
BnaC04g01420D
BnaC04g01420D protein.
      
 0.469
BnaC03g22720D
BnaC03g22720D protein.
      
 0.469
BnaA07g08040D
BnaA07g08040D protein.
      
 0.465
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.