STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g02560DBnaC05g02560D protein; Belongs to the protein kinase superfamily. (472 aa)    
Predicted Functional Partners:
BnaC07g31620D
BnaC07g31620D protein.
    
 0.772
BnaAnng03890D
BnaAnng03890D protein.
    
 0.772
BnaC07g32160D
BnaC07g32160D protein.
    
 0.594
BnaA01g19540D
BnaA01g19540D protein.
    
 0.594
BnaC01g42420D
BnaC01g42420D protein.
    
 0.594
BnaC03g73190D
BnaC03g73190D protein.
    
  0.527
BnaC09g39320D
BnaC09g39320D protein.
    
 0.492
BnaA04g11000D
BnaA04g11000D protein; Belongs to the NOB1 family.
    
 0.492
BnaC04g33060D
BnaC04g33060D protein; Belongs to the NOB1 family.
    
 0.492
BnaC06g42290D
BnaC06g42290D protein.
    
 0.492
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.