Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g22340DBnaA04g22340D protein. (422 aa)    
Predicted Functional Partners:
BnaA03g51000D
BnaA03g51000D protein.
     
 0.507
BnaA07g24800D
BnaA07g24800D protein.
      
 0.498
BnaC08g44830D
BnaC08g44830D protein.
      
 0.498
BnaA07g00950D
BnaA07g00950D protein.
      
 0.433
BnaA09g10060D
BnaA09g10060D protein.
      
 0.433
BnaA06g15970D
BnaA06g15970D protein.
  
  0.431
BnaC04g56870D
BnaC04g56870D protein.
  
  0.430
BnaC04g13360D
BnaC04g13360D protein; Belongs to the protein kinase superfamily.
  
  
  0.427
BnaA05g11580D
BnaA05g11580D protein.
  
  
  0.426
BnaCnng65160D
BnaCnng65160D protein.
  
  0.423
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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