Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g14300DBnaC05g14300D protein. (376 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaC09g18270D
BnaC09g18270D protein.
  
     0.524
BnaC02g26210D
BnaC02g26210D protein.
  
     0.507
BnaC09g17570D
BnaC09g17570D protein.
  
     0.506
BnaC06g24260D
Sulfotransferase; Belongs to the sulfotransferase 1 family.
  
     0.506
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.487
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.475
BnaC02g01410D
BnaC02g01410D protein.
  
     0.470
BnaAnng06330D
BnaAnng06330D protein.
  
     0.470
BnaA01g33720D
BnaA01g33720D protein.
  
 
  0.469
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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