STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g21890DBnaA04g21890D protein. (837 aa)    
Predicted Functional Partners:
BnaC03g57700D
BnaC03g57700D protein.
   
 0.982
BnaA09g27900D
BnaA09g27900D protein.
   
 0.982
BnaCnng20130D
BnaCnng20130D protein.
   
 0.982
BnaC05g51080D
BnaC05g51080D protein.
   
 0.982
BnaCnng33750D
BnaCnng33750D protein.
   
 0.982
BnaCnng53700D
BnaCnng53700D protein.
   
 0.982
BnaC05g12460D
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.
  
 0.975
BnaA06g10940D
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.
  
 0.975
BnaC08g09940D
BnaC08g09940D protein.
    
 0.973
BnaA08g05520D
BnaA08g05520D protein.
    
 0.973
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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