STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g21640DBnaA04g21640D protein. (97 aa)    
Predicted Functional Partners:
BnaC09g40670D
Autophagy protein 5; Required for autophagy.
    
 
 0.923
BnaCnng63340D
BnaCnng63340D protein.
    
 
 0.923
BnaC06g18120D
BnaC06g18120D protein.
    
 0.907
BnaC06g18000D
BnaC06g18000D protein.
    
 0.907
BnaC06g42970D
BnaC06g42970D protein.
    
 0.907
BnaA01g26540D
BnaA01g26540D protein.
   
 0.904
BnaC01g43860D
BnaC01g43860D protein.
   
 0.904
BnaA03g50220D
BnaA03g50220D protein.
    
 
 0.879
BnaA06g15760D
BnaA06g15760D protein.
   
 0.877
BnaA06g15770D
BnaA06g15770D protein.
   
 0.877
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.