Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g18920DBnaA04g18920D protein. (645 aa)    
Predicted Functional Partners:
BnaC04g12970D
BnaC04g12970D protein.
    
 0.716
BnaA04g11170D
BnaA04g11170D protein.
    
 0.716
BnaA09g11740D
BnaA09g11740D protein.
    
 0.709
BnaC06g23920D
BnaC06g23920D protein.
      
 0.706
BnaA09g47300D
BnaA09g47300D protein; Belongs to the disease resistance NB-LRR family.
      
 0.706
BnaA04g11180D
BnaA04g11180D protein.
      
 0.706
BnaA01g32130D
BnaA01g32130D protein.
      
 0.706
BnaC02g46990D
BnaC02g46990D protein.
      
 0.706
BnaAnng13630D
BnaAnng13630D protein.
     
 0.568
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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