STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g14280DBnaC05g14280D protein. (331 aa)    
Predicted Functional Partners:
BnaA04g05330D
BnaA04g05330D protein.
   
 0.976
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.973
BnaC03g73190D
BnaC03g73190D protein.
  
 
 0.972
BnaC06g14370D
BnaC06g14370D protein.
   
 0.956
BnaC04g08700D
BnaC04g08700D protein.
   
 0.956
BnaC03g34830D
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.950
BnaA01g32660D
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.950
BnaC09g39060D
BnaC09g39060D protein.
  
 
 0.946
BnaA09g35340D
BnaA09g35340D protein.
   
 0.943
BnaA02g16870D
BnaA02g16870D protein.
   
 0.943
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.