STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g04220DBnaC04g04220D protein. (876 aa)    
Predicted Functional Partners:
BnaCnng50720D
BnaCnng50720D protein.
      
 0.545
BnaA02g24640D
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
      
 0.515
BnaA06g40310D
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
      
 0.515
BnaA08g27990D
BnaA08g27990D protein.
     
 0.501
BnaC05g49010D
BnaC05g49010D protein.
     
 0.501
BnaC05g49000D
BnaC05g49000D protein.
     
 0.501
BnaA03g58110D
BnaA03g58110D protein; Belongs to the peptidase C19 family.
      
 0.497
BnaA09g16940D
BnaA03g49090D protein.
    
 0.492
BnaA09g26330D
BnaA09g26330D protein.
    
 0.492
BnaCnng17780D
BnaCnng17780D protein.
    
 0.492
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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