STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g04170DBnaC04g04170D protein. (347 aa)    
Predicted Functional Partners:
BnaC03g12950D
BnaC03g12950D protein.
   
 0.991
BnaA09g06860D
BnaA09g06860D protein.
   
 0.973
BnaA08g29130D
BnaA08g29130D protein.
  
 0.931
BnaCnng55870D
BnaCnng55870D protein.
  
 0.931
BnaA04g16480D
BnaA04g16480D protein.
  
0.929
BnaA05g13130D
BnaA05g13130D protein.
   
 0.905
BnaA03g00230D
BnaA03g00230D protein.
   
 0.905
BnaC06g42060D
BnaC06g42060D protein.
   
 0.905
BnaA07g07810D
BnaA07g07810D protein.
  
 0.886
BnaC09g37680D
BnaC09g37680D protein.
    
 0.865
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.