STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g08710DBnaC05g08710D protein. (608 aa)    
Predicted Functional Partners:
BnaC03g22780D
BnaC03g22780D protein.
   
    0.637
BnaA03g56510D
BnaA03g56510D protein.
   
    0.637
BnaA03g47110D
BnaA03g47110D protein.
   
 0.600
BnaA04g17950D
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
   
 0.600
BnaA01g14420D
BnaA01g14420D protein.
   
 0.600
BnaC04g13690D
BnaC04g13690D protein.
   
 0.600
BnaC04g13700D
BnaC04g13700D protein.
   
 0.600
BnaA09g52160D
BnaA09g52160D protein.
  
 
 
0.561
BnaC05g12200D
BnaC05g12200D protein.
   
 
 0.549
BnaA06g10670D
BnaA06g10670D protein.
   
 
 0.549
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.