STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g04870DBnaA09g04870D protein. (348 aa)    
Predicted Functional Partners:
BnaA06g36240D
Nuclear cap-binding protein subunit 2.
    
 0.580
BnaC01g37270D
BnaC01g37270D protein.
    
 
 0.545
BnaA01g29660D
BnaA01g29660D protein.
    
 
 0.545
BnaA05g14010D
BnaA05g14010D protein.
    
 
 0.510
BnaC06g10600D
BnaC06g10600D protein.
    
 
 0.510
BnaC06g06960D
BnaC06g06960D protein.
    
 
 0.510
BnaA06g01270D
BnaA06g01270D protein.
    
 
 0.510
BnaA06g23350D
BnaA06g23350D protein.
    
 0.502
BnaC04g28920D
BnaC04g28920D protein.
      
 0.499
BnaC02g48600D
BnaC02g48600D protein.
      
 0.495
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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