Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g18180DBnaA04g18180D protein. (1030 aa)    
Predicted Functional Partners:
BnaA06g02340D
BnaA06g02340D protein.
    
 0.947
BnaC06g04580D
BnaC06g04580D protein.
    
 0.947
BnaC01g32310D
BnaC01g32310D protein.
    
 0.943
BnaA01g25390D
BnaA01g25390D protein.
    
 0.943
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.896
BnaA02g34810D
BnaA02g34810D protein.
   
 0.885
BnaC02g45180D
BnaC02g45180D protein.
   
 0.885
BnaC03g64850D
BnaC03g64850D protein.
   
 0.846
BnaC06g14650D
BnaC06g14650D protein.
   
 0.829
BnaC04g47970D
BnaC04g47970D protein.
   
 0.829
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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