STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g24300DBnaA08g24300D protein. (164 aa)    
Predicted Functional Partners:
BnaC03g61750D
BnaC03g61750D protein.
  
     0.512
BnaA08g15460D
BnaA08g15460D protein.
  
     0.512
BnaA03g53610D
BnaA03g53610D protein.
  
     0.511
BnaA04g19880D
BnaA04g19880D protein.
  
     0.507
BnaA09g31080D
BnaA09g31080D protein.
  
     0.503
BnaA04g27130D
BnaA04g27130D protein.
  
     0.496
BnaA03g17260D
BnaA03g17260D protein.
  
     0.475
BnaCnng77190D
BnaCnng77190D protein.
  
     0.470
BnaC06g24760D
BnaC06g24760D protein.
  
     0.467
BnaC07g33660D
BnaC07g33660D protein.
  
     0.463
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.