BnaA09g04100D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BnaA09g04100D

BnaA09g04100D protein; Belongs to the protein kinase superfamily. (406 aa)

Predicted Functional Partners:

BnaA07g00650D

0.860

BnaA02g05610D

0.617

BnaAnng29840D

0.617

BnaC01g26690D

0.596

BnaA04g05330D

0.562

BnaA01g06170D

0.521

BnaAnng15610D

0.496

BnaC04g54660D

0.496

BnaA08g19620D

0.486

BnaC02g22530D

0.486

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g06170D	BnaA09g04100D	A0A078GSV3	A0A078G420	BnaA01g06170D protein.	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	0.521
BnaA02g05610D	BnaA08g19620D	A0A078F3R4	A0A078HE79	BnaA02g05610D protein.	BnaA08g19620D protein.	0.546
BnaA02g05610D	BnaA09g04100D	A0A078F3R4	A0A078G420	BnaA02g05610D protein.	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	0.617
BnaA02g05610D	BnaC01g26690D	A0A078F3R4	A0A078FSR4	BnaA02g05610D protein.	BnaC01g26690D protein.	0.564
BnaA02g05610D	BnaC02g22530D	A0A078F3R4	A0A078I6W8	BnaA02g05610D protein.	BnaC02g22530D protein.	0.546
BnaA04g05330D	BnaA08g19620D	A0A078GCW5	A0A078HE79	BnaA04g05330D protein.	BnaA08g19620D protein.	0.456
BnaA04g05330D	BnaA09g04100D	A0A078GCW5	A0A078G420	BnaA04g05330D protein.	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	0.562
BnaA04g05330D	BnaC02g22530D	A0A078GCW5	A0A078I6W8	BnaA04g05330D protein.	BnaC02g22530D protein.	0.456
BnaA07g00650D	BnaA09g04100D	A0A078HDM9	A0A078G420	BnaA07g00650D protein.	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	0.860
BnaA07g00650D	BnaAnng15610D	A0A078HDM9	A0A078J4P4	BnaA07g00650D protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.509
BnaA07g00650D	BnaC01g26690D	A0A078HDM9	A0A078FSR4	BnaA07g00650D protein.	BnaC01g26690D protein.	0.439
BnaA07g00650D	BnaC04g54660D	A0A078HDM9	A0A078JFQ8	BnaA07g00650D protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.509
BnaA08g19620D	BnaA02g05610D	A0A078HE79	A0A078F3R4	BnaA08g19620D protein.	BnaA02g05610D protein.	0.546
BnaA08g19620D	BnaA04g05330D	A0A078HE79	A0A078GCW5	BnaA08g19620D protein.	BnaA04g05330D protein.	0.456
BnaA08g19620D	BnaA09g04100D	A0A078HE79	A0A078G420	BnaA08g19620D protein.	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	0.486
BnaA08g19620D	BnaAnng29840D	A0A078HE79	A0A078JUL8	BnaA08g19620D protein.	BnaAnng29840D protein.	0.546
BnaA08g19620D	BnaC01g26690D	A0A078HE79	A0A078FSR4	BnaA08g19620D protein.	BnaC01g26690D protein.	0.459
BnaA09g04100D	BnaA01g06170D	A0A078G420	A0A078GSV3	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	BnaA01g06170D protein.	0.521
BnaA09g04100D	BnaA02g05610D	A0A078G420	A0A078F3R4	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	BnaA02g05610D protein.	0.617
BnaA09g04100D	BnaA04g05330D	A0A078G420	A0A078GCW5	BnaA09g04100D protein; Belongs to the protein kinase superfamily.	BnaA04g05330D protein.	0.562