STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g28530DBnaA01g28530D protein. (213 aa)    
Predicted Functional Partners:
BnaA09g40600D
BnaA09g40600D protein.
    
 
 0.580
BnaC09g23720D
BnaC09g23720D protein.
  
    0.548
BnaA01g28540D
BnaA01g28540D protein.
  
     0.535
BnaC03g72910D
BnaC03g72910D protein.
  
    0.530
BnaAnng18990D
BnaAnng18990D protein.
  
     0.513
BnaC05g14320D
BnaC05g14320D protein.
    
 0.509
BnaA06g12800D
BnaA06g12800D protein.
    
 0.509
BnaA02g27960D
BnaA02g27960D protein.
  
    0.507
BnaA02g10270D
BnaA02g10270D protein.
    
 0.498
BnaC02g44810D
BnaC02g44810D protein.
    
 0.498
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.