Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g11460DBnaC04g11460D protein. (849 aa)    
Predicted Functional Partners:
BnaA01g26840D
BnaA01g26840D protein.
      
 0.598
BnaC05g35140D
BnaC05g35140D protein.
      
 0.598
BnaC04g27000D
BnaC04g27000D protein.
      
 0.554
BnaA07g04890D
BnaA07g04890D protein.
  
   
 0.540
BnaA03g51910D
BnaA03g51910D protein.
      
 0.534
BnaC04g08800D
BnaC04g08800D protein.
      
 0.528
BnaAnng21130D
BnaAnng21130D protein.
      
 0.528
BnaC04g08690D
BnaC04g08690D protein.
   
 
 0.495
BnaA06g33100D
BnaA06g33100D protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
      
 0.480
BnaC09g01010D
BnaC09g01010D protein.
      
 0.480
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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